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INSTALLATION

Terminal tools (complete)Connect MCPVS Code Marketplace extensionCLI (no AI agent)CLI init (first run)CLI account & logoutNPX (Recommended)Test Pulse (check test)Test Pulse commandsProject MemorySupply Pulse (supply)Supply Pulse commandsTerminal CLI referenceWeb Terminal (dashboard)Command CompassCLI commandsCLI in DockerCLI: All editors (one command)CLI: Crush, Hermes, ChatGPT, KiloOAuth & HTTP setupInstall overviewHTTP APISetup WalkthroughHTTP vs stdio

API & KEYS

API Key ManagementKey Naming & FormatAuthenticationKey Dashboard

CONFIGURATION

Universal RequirementsSupported EditorsHow It WorksArchitectureCLAUDE.md TemplateAGENTS.md Template

EDITORS28 guides

Supported EditorsVS CodeVS Code extension (Marketplace)Claude CodeCursorWindsurfJetBrains

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TOOLS10 tools

Capabilities OverviewTools OverviewTool FilteringTool Workflowsget_project_contextread_codefind_codecheck_packageexplain_architectureZephex_dev_infocheck_testaudit_headerskeep_thinkingproject_memory

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Best PracticesToken EfficiencyUse CasesZephex vs Local MCPZephex vs Context7Zephex vs GitHub MCPZephex vs SmitheryMCP EcosystemMarkdown Access

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Common issues and solutions

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Editor setup

Trae MCP Server

TRAE is project-scoped only: cd to your repo root, then npx -y zephex setup --trae. Writes stdio to .trae/mcp.json (command npx, args, ZEPHEX_API_KEY) — not hosted HTTP url.

Official Trae MCP documentation: Trae MCP docs

MCP endpointhttps://zephex.dev/mcp
AuthenticationZEPHEX_API_KEY in mcpServers.zephex.env (stdio)
Config file<project>/.trae/mcp.json (project root — run setup from repo)

Why Zephex

Without MCP, your agent guesses project layout and misses supply-chain risk. Zephex connects one hosted endpoint so every session gets the same ten tools — no per-machine npm installs, no version drift across the team.

Before you start

  • Trae IDE installed with MCP support.
  • Terminal open at your project root (folder with package.json or your app code).
  • Node.js 18+ and npx on PATH.
  • A Zephex API key from setup OAuth or Dashboard → API Keys.

Get and paste your API key

HTTP and stdio setups both need a key from your Zephex dashboard. OAuth-only flows (ChatGPT, Claude.ai web) sign you in in the browser instead — skip this section for those.

  1. Sign in at zephex.dev → Dashboard → API Keys (or /dashboard/api-keys).
  2. Click Create API key, give it a name you will recognize (e.g. "Kilo — work laptop"), then create.
  3. Copy the key as soon as it appears — Zephex only shows the full secret once. It starts with mcp_sk_ or a newer mcp_prod_… format.
  4. Paste into your config: either only the key in an env field (ZEPHEX_API_KEY), or the full HTTP header value Authorization: Bearer YOUR_KEY — match what your editor’s form asks for.
  5. Do not wrap the key in extra quotes inside JSON unless the file already quotes other string values.
  6. Never commit API keys to git. Revoke and create a new key in the dashboard if one leaks.

Setup policy for Trae

Matches the published CLI (mcp-proxy/src/commands/setup.ts). One command signs you in, writes the correct transport, and verifies 10 tools.

Recommended commandnpx -y zephex setup --trae
Project-scopednpx -y zephex setup --trae --project
Transportstdio (npx -y zephex + ZEPHEX_API_KEY)
Config parent keymcpServers

Global vs project config

  • TRAE is project-only: <repo>/.trae/mcp.json — run setup from the repo root (cd into your app first).
  • No global TRAE path in the wizard — opening a different folder without .trae/mcp.json means no Zephex.

After setup

  • Setup writes stdio npx -y zephex — not url HTTP (repo tools need local bridge).
  • Restart TRAE after saving. Pass github:owner/repo if workspace detection is unclear.

Account teardown: logout vs disconnect · Connect MCP walkthrough

Find where setup wrote your config

Search docs for “where is my MCP file” — the answer is always: run list first, then open the path it prints.

  1. cd to your project root, then npx -y zephex@latest setup --trae.
  2. Config file: .trae/mcp.json with mcpServers.zephex command/args/env (stdio).
  3. list shows the path only when cwd or scan finds .trae/mcp.json.

Documented paths: <project>/.trae/mcp.json

Fastest install

TRAE project mcp.json uses stdio in the setup wizard.

Guided install (matches published CLI)

Runs the same code as mcp-proxy/src/commands/setup.ts — OAuth in browser, creates a CLI key, writes your editor config, verifies tools.

shell
npx -y zephex setup --trae

Already have a key?

Skip browser OAuth — paste a key from zephex.dev/dashboard/keys. Must start with mcp_prod_, mcp_dev_, or mcp_sk_.

shell
npx -y zephex setup --trae --api-key mcp_prod_your-key-here

Typical stdio shape

If you edit by hand after setup: Transport: stdio (see <project>/.trae/mcp.json).

json
{  "mcpServers": {    "zephex": {      "command": "npx",      "args": ["-y", "zephex"],      "env": {        "ZEPHEX_API_KEY": "mcp_sk_your_key_here"      }    }  }}

After CLI install, fully restart the app if tools do not appear. Manual JSON/TOML blocks below are equivalent — use them when CLI commands are unavailable.

Hosted HTTP vs npx stdio

  • Recommended: npx -y zephex setup --trae — TRAE project mcp.json uses stdio in the setup wizard.
  • Config path: <project>/.trae/mcp.json
  • Manual stdio shape: command "npx", args ["-y","zephex"], env ZEPHEX_API_KEY (parent key: mcpServers).
  • Optional hosted HTTP (https://zephex.dev/mcp + Bearer) only if you do not need automatic workspace file access — pass github: URLs in prompts.
  • Never keep two zephex entries (stdio + HTTP) in the same config — pick one transport.
  • Cloud-only tools (check_package, project_memory, audit_headers, keep_thinking, Zephex_dev_info) work on both transports.
  • Repo tools (get_project_context, read_code, find_code, explain_architecture, check_test) need either stdio/npx setup or an explicit github:owner/repo or absolute path on HTTP.

Full comparison: HTTP vs stdio · npx zephex reference

How to connect Zephex

TRAE is project-only: cd to repo root, then npx zephex setup --trae writes stdio to .trae/mcp.json (command npx, not url HTTP).

  1. cd /path/to/your/project (repo root).
  2. Run: npx -y zephex@latest setup --trae (browser OAuth, writes .trae/mcp.json).
  3. Confirm with npx -y zephex@latest list — should show <project>/.trae/mcp.json.
  4. Fully restart Trae if the MCP server list does not refresh.
  5. New agent chat: test check_package and get_project_context on this project.
  6. Optional manual edit: paste stdio JSON below into .trae/mcp.json (do not mix url HTTP block).

Configuration

Replace mcp_sk_your_key_here with your key from Dashboard → API Keys. Copy the full key once at creation — paste into Authorization: Bearer … for HTTP configs, or into ZEPHEX_API_KEY for stdio/npx configs.

stdio (what setup writes)

mcpServers.zephex with command npx — matches writeTraeConfig in setup.ts.

json
{  "mcpServers": {    "zephex": {      "command": "npx",      "args": ["-y", "zephex"],      "env": {        "ZEPHEX_API_KEY": "mcp_sk_your_key_here"      }    }  }}

Tip

Fully restart Trae after MCP JSON edits if the server list does not refresh.

Verify, repair, disconnect (CLI)

Run these in a terminal when the editor UI is unclear — catches stale npm, wrong transport, and project shadows.

shell
npx -y zephex@latest listnpx -y zephex@latest doctornpx -y zephex@latest repair# Fully quit the editor (Cmd+Q / Alt+F4), reopen, start a new agent session

Repair policy

  • npx -y zephex@latest repair pins stdio to zephex@latest, fixes OpenCode command-array shape, and adds PATH hints for GUI-launched apps.
  • repair migrates legacy HTTP → stdio for filesystem editors — not for Cursor, Claude Code global HTTP, or Crush.

Disconnect & skills

  • disconnect --<editor> removes Zephex from config files the CLI knows about and revokes the API key found in those files.
  • There is no disconnect --project flag — disconnect checks both global and project paths (project paths use your current terminal cwd).
  • Terminal-only sign-out: mcpcli logout (editors unchanged). Full teardown: mcpcli logout --all.
  • This editor: mcpcli disconnect --trae
  • Fresh OAuth: mcpcli reconnect --trae
  • Add agent guidance: mcpcli setup --trae --with-skill or mcpcli skills --<editor>.
  • Remove skills from one editor: mcpcli reset --trae (disconnect + skill files).
  • Remove all skill copies: mcpcli skills --remove.

Check that it works

After saving your config, confirm Zephex is connected before you rely on it in real work.

  1. Trae MCP list shows zephex connected.
  2. npx -y zephex@latest list shows .trae/mcp.json at the project you set up.
  3. Agent: list available MCP tools — expect ten Zephex names.
  4. Test read_code or find_code with a symbol from your repo.

Common searches

Questions people ask when Trae does not show Zephex tools — indexed for docs search.

TRAE Zephex MCP file location

Project root .trae/mcp.json only. Run setup --trae from that directory.

Example ways to use the tools

You do not call tools yourself — ask your agent in plain language. Try these once Zephex is connected:

“Trae IDE: get_project_context on github:myorg/mobile-app — React Native stack.”

Remote repo context via Trae MCP JSON url transport.

“find_code NavigationContainer setup in our app entry.”

Mobile codebase search from Trae agent.

“check_test: add biometric unlock to the login screen.”

Scoped native + JS files for the feature.

“check_package on a native module npm wrapper before linking.”

Registry check for bridge packages.

“explain_architecture for offline sync queue and API client.”

Diagram for mobile data flow decisions.

“read_code the redux slice responsible for session tokens.”

Focused state-management read.

Which tools need your project path?

Trae MCP uses the same mcpServers url shape as Cursor. Name the repo path in prompts if the agent does not infer the workspace.

Need a repo or folder path

  • get_project_context — full stack snapshot for one repo
  • read_code — read functions/classes by symbol name
  • find_code — search definitions and usages
  • explain_architecture — Mermaid diagrams for the repo
  • check_test — minimal file list for a task you describe

Work without a local project

  • check_package — npm/PyPI/Cargo/Go registry safety (no repo path)
  • project_memory — Cross-session project memory: remember decisions, gotchas, goals, conventions across sessions via local SQLite (stdio only).
  • audit_headers — security grade for any HTTPS URL you own or may test
  • keep_thinking — structured debugging notes across steps
  • Zephex_dev_info — vetted patterns (auth, DB, deploy, etc.)

How to tell the agent where the code lives

  • GitHub (no clone required): say github:owner/repo — example: github:vercel/next.js
  • Local folder: give the absolute path to the project root (the folder that contains package.json, pyproject.toml, or go.mod).
  • If your editor already has the repo open, try “use get_project_context on this workspace” first; if the tool returns empty, repeat with the full path or github: URL in the same chat.
  • For read_code / find_code, name the symbol or search term in the same message as the path (e.g. “find_code AuthService in github:myorg/api”).

macOS and Windows paths

  • macOS example path: /Users/yourname/Developer/my-app
  • Windows example path: C:\Users\yourname\projects\my-app
  • Replace yourname with your Mac or Windows login — the agent cannot guess your home directory.
  • Cloud-only tools (check_package, audit_headers) never need your username or project folder.

When Zephex will not connect

These situations usually mean the setup cannot work until you fix the underlying issue:

  • No internet or a firewall blocks outbound HTTPS to zephex.dev (port 443).
  • API key never created, revoked, or pasted incorrectly (missing Bearer , extra quotes, or truncated copy).
  • Wrong MCP URL — must be exactly https://zephex.dev/mcp (not /docs, not /api, no wrong host).
  • Mixed stdio + HTTP — two zephex entries (npx and url) confuse many clients; keep one transport.
  • Corporate proxy strips Authorization headers or chunked transfer encoding.
  • Monthly request limit reached on the Free plan (555 requests/month) — tools stop until next cycle, share for bonus requests, or upgrade.
  • Editing the wrong config file — global vs project-level paths differ by editor and OS.
  • App not fully quit after save — MCP often loads only on a cold start (especially IDEs).
  • Tools connect but return “no project” — not a connection failure; add github:owner/repo or an absolute path (see tool usage section).
  • Node.js or npx not on PATH when the desktop app launches (common on macOS Dock launches).
  • Invalid JSON in the config file (comments, trailing commas, or wrong wrapper key).
  • ZEPHEX_API_KEY missing, still set to the placeholder, or pasted in the wrong field (stdio uses env, not Bearer headers).
  • You edited Claude Code’s config but opened Claude Desktop (different files).
  • App was not fully quit after saving the config — MCP only reloads on a cold start.
  • npx works in Terminal but not inside the app — use absolute paths to node/npx in the command block if needed.
  • First npx -y zephex run can take 30–60s — increase startup_timeout_sec where the editor supports it.
  • Still have an HTTP url block while testing stdio — remove the duplicate zephex server.
  • Ran setup from home directory — .trae/mcp.json landed in the wrong folder.
  • Manual url + Bearer HTTP block instead of stdio — repo tools may look broken.
  • Did not restart Trae after edit.

If something goes wrong

No tools

stdio command/args/env in .trae/mcp.json — run setup --trae from repo root.

Wrong folder

cd to project root before setup; list confirms .trae/mcp.json path.

JSON invalid

mcpServers wrapper, no trailing commas.

HTTP url block present

Remove url HTTP — setup writes stdio only.

Empty project

github: or absolute path in prompt.

Zephex missing in this folder only

cd to repo root and run npx -y zephex@latest setup --trae again.

Tools work for packages but not my repo

Include github:owner/repo or absolute path in the same message as get_project_context.

Duplicate zephex entries

Keep only stdio command/args/env — remove url HTTP variant.

Still stuck? Quickstart · MCP troubleshooting

Tools included with Zephex

Trae MCP JSON url transport — ten tools for the IDE agent:

  • get_project_context

    Reads your project structure, dependencies, scripts, env vars, and framework markers in one call. Replaces manually opening package.json, tsconfig, and multiple config files at the start of every session.

  • read_code

    AST-based code extraction: pass a symbol name and get the implementation without reading entire files. Supports symbol lookup, batched file reads, and structural outlines for large files.

  • find_code

    Ranked search across the repo for definitions, usages, and patterns. Faster than blind grep when the agent does not know where a symbol lives.

  • check_package

    Live registry lookup for npm, PyPI, Cargo, and Go modules. Surfaces typosquat risk, maintainer changes, and suspicious version jumps before you run install.

  • explain_architecture

    Generates Mermaid diagrams for auth flows, service boundaries, and module dependencies so the agent reasons about structure instead of guessing.

  • check_test

    Turns a task description into the smallest file set to read or edit, with risk ratings and caller impact notes.

  • audit_headers

    Grades a deployed URL for CSP, HSTS, TLS, cookies, and redirects. Returns fix snippets for common hosts (Vercel, Cloudflare, Nginx).

  • keep_thinking

    Structured multi-step debugging: tracks hypotheses and conclusions so long investigations do not loop.

  • Zephex_dev_info

    Expert patterns for authentication, databases, frontend frameworks, deployment, and mobile stacks when the agent needs vetted guidance.

  • project_memory

    Persists decisions, gotchas, and conventions per project in ~/.zephex/memory (SQLite FTS5). recall before unfamiliar areas; remember after discoveries. Local stdio only on npx zephex.

Related

  • Cursor MCP setup
  • Antigravity MCP setup
  • Connect MCP walkthrough
  • Quickstart — create your first API key
  • HTTP vs stdio — which to use
  • npx zephex setup commands
  • MCP troubleshooting
  • All supported editors
  • All 10 MCP tools
  • Install wizard
  • Pricing and limits