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INSTALLATION

Terminal tools (complete)Connect MCPVS Code Marketplace extensionCLI (no AI agent)CLI init (first run)CLI account & logoutNPX (Recommended)Test Pulse (check test)Test Pulse commandsProject MemorySupply Pulse (supply)Supply Pulse commandsTerminal CLI referenceWeb Terminal (dashboard)Command CompassCLI commandsCLI in DockerCLI: All editors (one command)CLI: Crush, Hermes, ChatGPT, KiloOAuth & HTTP setupInstall overviewHTTP APISetup WalkthroughHTTP vs stdio

API & KEYS

API Key ManagementKey Naming & FormatAuthenticationKey Dashboard

CONFIGURATION

Universal RequirementsSupported EditorsHow It WorksArchitectureCLAUDE.md TemplateAGENTS.md Template

EDITORS28 guides

Supported EditorsVS CodeVS Code extension (Marketplace)Claude CodeCursorWindsurfJetBrains

PLATFORM

macOSWindowsLinux

TOOLS10 tools

Capabilities OverviewTools OverviewTool FilteringTool Workflowsget_project_contextread_codefind_codecheck_packageexplain_architectureZephex_dev_infocheck_testaudit_headerskeep_thinkingproject_memory

GUIDES

Best PracticesToken EfficiencyUse CasesZephex vs Local MCPZephex vs Context7Zephex vs GitHub MCPZephex vs SmitheryMCP EcosystemMarkdown Access

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Editor setup

Claude Code MCP Server

Connect Zephex to Claude Code with claude mcp add (HTTP), npx -y zephex setup --claude, or ~/.claude.json. Hosted endpoint https://zephex.dev/mcp — stdio via npx is only a fallback when HTTP fails.

Official Claude Code MCP documentation: Claude Code MCP docs

MCP endpointhttps://zephex.dev/mcp
AuthenticationAuthorization: Bearer mcp_sk_... (HTTP) or ZEPHEX_API_KEY env (stdio)
Config file~/.claude.json (user) or .mcp.json (project)

Why Zephex

Without MCP, your agent guesses project layout and misses supply-chain risk. Zephex connects one hosted endpoint so every session gets the same ten tools — no per-machine npm installs, no version drift across the team.

Before you start

  • Claude Code CLI installed (claude --version).
  • Node.js 18+ if you use npx setup or stdio.
  • A Zephex API key from Dashboard → API Keys.
  • Network access to https://zephex.dev/mcp for hosted HTTP (recommended).

Get and paste your API key

HTTP and stdio setups both need a key from your Zephex dashboard. OAuth-only flows (ChatGPT, Claude.ai web) sign you in in the browser instead — skip this section for those.

  1. Sign in at zephex.dev → Dashboard → API Keys (or /dashboard/api-keys).
  2. Click Create API key, give it a name you will recognize (e.g. "Kilo — work laptop"), then create.
  3. Copy the key as soon as it appears — Zephex only shows the full secret once. It starts with mcp_sk_ or a newer mcp_prod_… format.
  4. Paste into your config: either only the key in an env field (ZEPHEX_API_KEY), or the full HTTP header value Authorization: Bearer YOUR_KEY — match what your editor’s form asks for.
  5. Do not wrap the key in extra quotes inside JSON unless the file already quotes other string values.
  6. Never commit API keys to git. Revoke and create a new key in the dashboard if one leaks.

Setup policy for Claude Code

Matches the published CLI (mcp-proxy/src/commands/setup.ts). One command signs you in, writes the correct transport, and verifies 10 tools.

Recommended commandnpx -y zephex setup --claude
Project-scopednpx -y zephex setup --claude --project
TransportHosted HTTP (url + Bearer)
Config parent keymcpServers

Global vs project config

  • Global setup is the default — run setup without --project so Zephex works in every folder you open.
  • Global setup also removes stale project-level Zephex entries that shadow your user config.
  • Add --project only when you intentionally want workspace-scoped config (e.g. .cursor/mcp.json in one repo).

After setup

  • When claude CLI is installed, setup runs claude mcp add --transport http.
  • Otherwise writes HTTP JSON to ~/.claude.json or project .mcp.json.

Account teardown: logout vs disconnect · Connect MCP walkthrough

Find where setup wrote your config

Search docs for “where is my MCP file” — the answer is always: run list first, then open the path it prints.

  1. Run npx -y zephex@latest list — canonical path list for claude-code.
  2. Wizard writes to: ~/.claude.json or <project>/.mcp.json
  3. macOS uses ~/ and ~/.config; Windows uses %USERPROFILE% and %APPDATA%; Linux uses ~/.config.

Documented paths: ~/.claude.json or <project>/.mcp.json

Fastest install

Claude Code supports HTTP MCP; the wizard runs claude mcp add --transport http when the CLI is installed.

Guided install (matches published CLI)

Runs the same code as mcp-proxy/src/commands/setup.ts — OAuth in browser, creates a CLI key, writes your editor config, verifies tools.

shell
npx -y zephex setup --claude

Already have a key?

Skip browser OAuth — paste a key from zephex.dev/dashboard/keys. Must start with mcp_prod_, mcp_dev_, or mcp_sk_.

shell
npx -y zephex setup --claude --api-key mcp_prod_your-key-here

Claude Code CLI (same as setup fallback)

setup.ts runs this when the claude binary is on PATH; otherwise it writes ~/.claude.json HTTP JSON.

shell
claude mcp add --scope user --transport http zephex \  https://zephex.dev/mcp \  --header "Authorization: Bearer mcp_sk_your_key_here"

Manual HTTP JSON

Paste if you are not using the CLI: Transport: http (see ~/.claude.json or <project>/.mcp.json).

json
{  "mcpServers": {    "zephex": {      "type": "http",      "url": "https://zephex.dev/mcp",      "headers": {        "Authorization": "Bearer mcp_sk_your_key_here"      }    }  }}

After CLI install, fully restart the app if tools do not appear. Manual JSON/TOML blocks below are equivalent — use them when CLI commands are unavailable.

Hosted HTTP vs npx stdio

  • Recommended: npx -y zephex setup --claude — Claude Code supports HTTP MCP; the wizard runs claude mcp add --transport http when the CLI is installed.
  • Config path: ~/.claude.json or <project>/.mcp.json
  • Manual HTTP: url https://zephex.dev/mcp + Authorization Bearer mcp_sk_…
  • Optional stdio fallback: npx -y zephex with ZEPHEX_API_KEY if HTTP fails on your network.
  • Never keep two zephex entries (stdio + HTTP) in the same config — pick one transport.
  • Cloud-only tools (check_package, project_memory, audit_headers, keep_thinking, Zephex_dev_info) work on both transports.
  • Repo tools (get_project_context, read_code, find_code, explain_architecture, check_test) need either stdio/npx setup or an explicit github:owner/repo or absolute path on HTTP.

Full comparison: HTTP vs stdio · npx zephex reference

How to connect Zephex

  1. Copy your Zephex API key from the dashboard.
  2. Fastest: run claude mcp add --transport http (block at top) or npx -y zephex setup --claude.
  3. Manual: edit ~/.claude.json — paste the HTTP mcpServers block (not command/npx).
  4. Remove any old zephex entry that used command: npx if you switched to HTTP.
  5. Run claude mcp list — zephex should show connected with tools.
  6. Start a session in your repo and test get_project_context.

Configuration

Replace mcp_sk_your_key_here with your key from Dashboard → API Keys. Copy the full key once at creation — paste into Authorization: Bearer … for HTTP configs, or into ZEPHEX_API_KEY for stdio/npx configs.

Hosted HTTP (~/.claude.json)

Recommended — Claude Code calls https://zephex.dev/mcp directly. Matches Anthropic’s HTTP MCP docs.

json
{  "mcpServers": {    "zephex": {      "type": "http",      "url": "https://zephex.dev/mcp",      "headers": {        "Authorization": "Bearer mcp_sk_your_key_here"      }    }  }}

stdio fallback (local npx)

Use only if HTTP is blocked. Claude spawns npx -y zephex; key goes in env.ZEPHEX_API_KEY, not Bearer headers.

json
{  "mcpServers": {    "zephex": {      "command": "npx",      "args": ["-y", "zephex"],      "env": {        "ZEPHEX_API_KEY": "mcp_sk_your_key_here"      }    }  }}

Note

Claude Desktop uses a different config path than Claude Code. This page is for the CLI only. HTTP URL must be exactly https://zephex.dev/mcp.

Verify, repair, disconnect (CLI)

Run these in a terminal when the editor UI is unclear — catches stale npm, wrong transport, and project shadows.

shell
npx -y zephex@latest listnpx -y zephex@latest doctornpx -y zephex@latest repair# Fully quit the editor (Cmd+Q / Alt+F4), reopen, start a new agent session

Repair policy

  • Hosted HTTP editors usually do not need repair — if auth fails, run reconnect or paste a fresh key from the dashboard.
  • Do not add a stdio npx block alongside url HTTP for the same zephex server.

Disconnect & skills

  • disconnect --<editor> removes Zephex from config files the CLI knows about and revokes the API key found in those files.
  • There is no disconnect --project flag — disconnect checks both global and project paths (project paths use your current terminal cwd).
  • Terminal-only sign-out: mcpcli logout (editors unchanged). Full teardown: mcpcli logout --all.
  • This editor: mcpcli disconnect --claude
  • Fresh OAuth: mcpcli reconnect --claude
  • Add agent guidance: mcpcli setup --claude --with-skill or mcpcli skills --<editor>.
  • Remove skills from one editor: mcpcli reset --claude (disconnect + skill files).
  • Remove all skill copies: mcpcli skills --remove.

Check that it works

After saving your config, confirm Zephex is connected before you rely on it in real work.

    Common searches

    Questions people ask when Claude Code does not show Zephex tools — indexed for docs search.

    Claude Code MCP config location

    ~/.claude.json (user) or .mcp.json in project root. Not the same file as Claude Desktop.

    Example ways to use the tools

    You do not call tools yourself — ask your agent in plain language. Try these once Zephex is connected:

    “claude mcp session: check_package task=upgrade on boto3 version pin in our Lambda repo.”

    HTTP transport from ~/.claude.json — tools in CLI sessions.

    “get_project_context on . — then find_code IAM policy builders.”

    AWS-heavy repos: map stack then search security code.

    “check_test: add SQS dead-letter handling to workers.”

    Infrastructure code scoped before Claude Code edits.

    “read_code the handler for processPayment in src/handlers.”

    Single-function focus for code review style prompts.

    “check_package on an internal npm scope package.”

    Typosquat check for private-looking names.

    “Zephex_dev_info for Lambda idempotency + DynamoDB — apply to our handler.”

    Patterns then local read_code.

    Which tools need your project path?

    You do not pick tools from a menu — ask your agent in normal sentences. Half of the tools only need a package name or URL; the other half need to know which codebase you mean (your Mac/Windows project folder or a GitHub repo).

    Need a repo or folder path

    • get_project_context — full stack snapshot for one repo
    • read_code — read functions/classes by symbol name
    • find_code — search definitions and usages
    • explain_architecture — Mermaid diagrams for the repo
    • check_test — minimal file list for a task you describe

    Work without a local project

    • check_package — npm/PyPI/Cargo/Go registry safety (no repo path)
    • project_memory — Cross-session project memory: remember decisions, gotchas, goals, conventions across sessions via local SQLite (stdio only).
    • audit_headers — security grade for any HTTPS URL you own or may test
    • keep_thinking — structured debugging notes across steps
    • Zephex_dev_info — vetted patterns (auth, DB, deploy, etc.)

    How to tell the agent where the code lives

    • GitHub (no clone required): say github:owner/repo — example: github:vercel/next.js
    • Local folder: give the absolute path to the project root (the folder that contains package.json, pyproject.toml, or go.mod).
    • If your editor already has the repo open, try “use get_project_context on this workspace” first; if the tool returns empty, repeat with the full path or github: URL in the same chat.
    • For read_code / find_code, name the symbol or search term in the same message as the path (e.g. “find_code AuthService in github:myorg/api”).

    macOS and Windows paths

    • macOS example path: /Users/yourname/Developer/my-app
    • Windows example path: C:\Users\yourname\projects\my-app
    • Replace yourname with your Mac or Windows login — the agent cannot guess your home directory.
    • Cloud-only tools (check_package, audit_headers) never need your username or project folder.

    When Zephex will not connect

    These situations usually mean the setup cannot work until you fix the underlying issue:

    • No internet or a firewall blocks outbound HTTPS to zephex.dev (port 443).
    • API key never created, revoked, or pasted incorrectly (missing Bearer , extra quotes, or truncated copy).
    • Wrong MCP URL — must be exactly https://zephex.dev/mcp (not /docs, not /api, no wrong host).
    • Mixed stdio + HTTP — two zephex entries (npx and url) confuse many clients; keep one transport.
    • Corporate proxy strips Authorization headers or chunked transfer encoding.
    • Monthly request limit reached on the Free plan (555 requests/month) — tools stop until next cycle, share for bonus requests, or upgrade.
    • Editing the wrong config file — global vs project-level paths differ by editor and OS.
    • App not fully quit after save — MCP often loads only on a cold start (especially IDEs).
    • Tools connect but return “no project” — not a connection failure; add github:owner/repo or an absolute path (see tool usage section).
    • Node.js or npx not on PATH when the desktop app launches (common on macOS Dock launches).
    • Invalid JSON in the config file (comments, trailing commas, or wrong wrapper key).
    • ZEPHEX_API_KEY missing, still set to the placeholder, or pasted in the wrong field (stdio uses env, not Bearer headers).
    • You edited Claude Code’s config but opened Claude Desktop (different files).
    • App was not fully quit after saving the config — MCP only reloads on a cold start.
    • npx works in Terminal but not inside the app — use absolute paths to node/npx in the command block if needed.
    • First npx -y zephex run can take 30–60s — increase startup_timeout_sec where the editor supports it.
    • Still have an HTTP url block while testing stdio — remove the duplicate zephex server.
    • Using ~/.cursor/mcp.json — that file is for Cursor, not Claude Code.
    • claude mcp add succeeded but ~/.claude.json still has an old npx block — remove duplicates.

    If something goes wrong

    Tools listed but every call fails auth

    HTTP: Bearer in headers. stdio: ZEPHEX_API_KEY in env only — do not mix both on one server entry.

    npx: command not found inside Claude Code

    Install Node 18+ or switch to hosted HTTP (no npx required).

    Still stuck? Quickstart · MCP troubleshooting

    Tools included with Zephex

    Claude Code HTTP MCP — ten tools via claude mcp or ~/.claude.json:

    • get_project_context

      Reads your project structure, dependencies, scripts, env vars, and framework markers in one call. Replaces manually opening package.json, tsconfig, and multiple config files at the start of every session.

    • read_code

      AST-based code extraction: pass a symbol name and get the implementation without reading entire files. Supports symbol lookup, batched file reads, and structural outlines for large files.

    • find_code

      Ranked search across the repo for definitions, usages, and patterns. Faster than blind grep when the agent does not know where a symbol lives.

    • check_package

      Live registry lookup for npm, PyPI, Cargo, and Go modules. Surfaces typosquat risk, maintainer changes, and suspicious version jumps before you run install.

    • explain_architecture

      Generates Mermaid diagrams for auth flows, service boundaries, and module dependencies so the agent reasons about structure instead of guessing.

    • check_test

      Turns a task description into the smallest file set to read or edit, with risk ratings and caller impact notes.

    • audit_headers

      Grades a deployed URL for CSP, HSTS, TLS, cookies, and redirects. Returns fix snippets for common hosts (Vercel, Cloudflare, Nginx).

    • keep_thinking

      Structured multi-step debugging: tracks hypotheses and conclusions so long investigations do not loop.

    • Zephex_dev_info

      Expert patterns for authentication, databases, frontend frameworks, deployment, and mobile stacks when the agent needs vetted guidance.

    • project_memory

      Persists decisions, gotchas, and conventions per project in ~/.zephex/memory (SQLite FTS5). recall before unfamiliar areas; remember after discoveries. Local stdio only on npx zephex.

    Related

    • Claude Desktop MCP setup
    • npx zephex commands
    • Quickstart — create your first API key
    • HTTP vs stdio — which to use
    • MCP troubleshooting
    • All supported editors
    • All 10 MCP tools
    • Install wizard
    • Pricing and limits